BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB003G06LP1|AL425175
(796 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig859 1548 0.0
>3x_Contig859
Length = 2084
Score = 1548 bits (779), Expect = 0.0
Identities = 791/795 (99%), Gaps = 1/795 (0%)
Strand = Plus / Minus
Query: 3 cgattcgatgtagtcaccaacacgtttcaattccttcttcaataggttagcccattgctt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1217 cgattcgatgtagtcaccaacacgtttcaattccttcttcaataggttagcccattgctt 1158
Query: 63 acgttcaagaccgtctcctccagatcttagacgtttgagtgagctacggacgtttgtcat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1157 acgttcaagaccgtctcctccagatcttagacgtttgagtgagctacggacgtttgtcat 1098
Query: 123 cgttttcttacactcttcttcgtccatactgtcgtattctttgtcaggaagacggatatc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 cgttttcttacactcttcttcgtccatactgtcgtattctttgtcaggaagacggatatc 1038
Query: 183 ggcttttggtgccaacggtatgtctttacctttcctctgctgttttttcgatccgacgac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 ggcttttggtgccaacggtatgtctttacctttcctctgctgttttttcgatccgacgac 978
Query: 243 aggcgtaccagatcttgatgatggttgttgatggtgatgggccttgccacgctttgtttc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 aggcgtaccagatcttgatgatggttgttgatggtgatgggccttgccacgctttgtttc 918
Query: 303 ggagctattgtctggtgtagagtccttgccggttaagttaacactattgccgtcacttgg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 ggagctattgtctggtgtagagtccttgccggttaagttaacactattgccgtcacttgg 858
Query: 363 ggtaccagcggtatgggcattttcgttcccattgctgttcccagcagtagtagcagactt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 ggtaccagcggtatgggcattttcgttcccattgctgttcccagcagtagtagcagactt 798
Query: 423 ctttggtttacgtttgttttgctgaggcgtcgtggttccggttgacgaagagccggcagg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ctttggtttacgtttgttttgctgaggcgtcgtggttccggttgacgaagagccggcagg 738
Query: 483 gtgagawggatcagtttggggacccttagcttcgtctcttaggacagttaataagtaatc 542
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 737 gtgagatggatcagtttggggacccttagcttcgtctcttaggacagtgaataagtaatc 678
Query: 543 gactcttctaccgagatgcacagcaccgggagctttcttcactgttttcttattagtgtt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gactcttctaccgagatgcacagcaccgggagctttcttcactgttttcttattagtgtt 618
Query: 603 ttcagaagacgccgtcacgattggtgtgtttgccgtagtgtcaggagtttctgtctttac 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttcagaagacgccgtcacgattggtgtgtttgccgtagtgtcaggagtttctgtctttac 558
Query: 663 agcatcagcaccaggtgttgaaga-cccgcaacagatgcccctggagcagatggtgtgag 721
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 557 agcatcagcaccaggtgttgaagaccccgcaacagatgcccctggagcagatggtgtgag 498
Query: 722 actaggtgctgcaggagtggcagctttctgagtwacttcattgttcaagaaaagtttttc 781
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 497 actaggtgctgcaggagtggcagctttctgagtaacttcattgttcaagaaaagtttttc 438
Query: 782 agttagtcccaaaaa 796
|||||||||||||||
Sbjct: 437 agttagtcccaaaaa 423
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4575
Number of Sequences: 1807
Number of extensions: 4575
Number of successful extensions: 24
Number of sequences better than 1.0e-20: 1
length of query: 796
length of database: 10,358,551
effective HSP length: 16
effective length of query: 780
effective length of database: 10,329,639
effective search space: 8057118420
effective search space used: 8057118420
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.9 bits)